Often, a jurisdiction takes in a plan review fee prior to reviewing plans, collecting the fee at the time the plans are submitted to their department.
To charge a customer for only the Plan Review fee, go to fees. Select only the Plan Review fee checkbox and click on Invoice. This will create an invoice that can now be found in the Payment page.
Go to the Payment page. There will be an invoice for just the Plan Review fee. Take the customer's payment for that amount and apply the customer's payment to the invoice containing the Plan Review fee.